@article {656, title = {Virus-templated Pt{\textendash}Ni(OH)2 nanonetworks for enhanced electrocatalytic reduction of water}, journal = {Nano Energy}, volume = {58}, year = {2019}, month = {Avr-2019}, pages = {167 - 174}, abstract = {

Clean hydrogen production via water electrolysis is incumbent upon the development of high-performing hydrogen evolution reaction electrocatalysts. Despite decades of commercial maturity, however, alkaline water electrolyzers continue to suffer from limitations in electrocatalytic activity and stability, even with noble metal catalysts. In recent years, combining platinum with oxophilic materials, such as metal hydroxides, has shown great promise for improving performance potentially by enabling stronger water dissociation at the surface of electrocatalysts. In this work, we leveraged the nanoscopic proportions and surface programmability of the filamentous M13 bacteriophage in the design, synthesis, and exceptional performance of 3D nanostructured biotemplated electrocatalysts for alkaline hydrogen evolution. We developed a facile synthesis method for phage-templated, Pt\–Ni(OH)2 nanonetworks, relying on scalable techniques like electroless deposition. After optimization of the platinum content, our materials display \–4.9 A mg\–1Pt at \−70 mV versus the reversible hydrogen electrode, the highest reported mass activity in 1 M KOH to date, and undergo minimal changes in overpotential under galvanostatic operation at \−10 mA cm\–2geo. Looking forward, the performance of these catalysts suggests that biotemplating nanostructures with M13 bacteriophage offers an interesting new route for developing high-performing electrocatalysts.

}, issn = {22112855}, doi = {10.1016/j.nanoen.2018.12.083}, url = {https://linkinghub.elsevier.com/retrieve/pii/S2211285518309960}, author = {Records, William C. and Yoon, Youngmin and Ohmura, Jacqueline F. and Chanut, Nicolas and Belcher, Angela M.} } @article {632, title = {On the existence and origin of sluggish diffusion in chemically disordered concentrated alloys}, journal = {Current Opinion in Solid State and Materials Science}, volume = {22}, year = {2018}, month = {Jun-2018}, pages = {65-74}, abstract = {

Concentrated single phase solid solutions, including medium- and high-entropy alloys, represent a new class of materials that have recently attracted significant interest due to exceptional functional and structural properties. Their fascinating properties are mainly attributed to the sluggish atomic-level diffusion and transport, but its controlling mechanisms are largely unknown and there is certain skepticism about its very existence. By using microsecond-scale molecular dynamics, on-the-fly and conventional kinetic Monte Carlo, we reveal the governing role of percolation effects and composition dependence of the vacancy migration energy in diffusion. Surprisingly, an increase of concentration of faster species (Fe) in face-centered cubic Ni-Fe alloy may decrease the overall atomic diffusion. Consequently, the composition dependence of tracer diffusion coefficient has a minimum near the site percolation threshold, similar to 20 at.\%Fe. We argue that this coupled percolation and composition-dependent barriers for vacancy jumps within different subsystems in medium- and high-entropy alloys leads, indeed, to the sluggish diffusion. A fast method for preselecting materials with potentially desired properties is suggested.

}, issn = {13590286}, doi = {10.1016/j.cossms.2018.05.003}, url = {https://linkinghub.elsevier.com/retrieve/pii/S135902861830038X}, author = {Osetsky, N. and B{\'e}land, Laurent Karim and Barashev, Alexander V. and Zhang, Yanwen} } @article {576, title = {Impact of Nanoporosity on Hydrocarbon Transport in Shales{\textquoteright} Organic Matter}, journal = {Nano Letters}, volume = {18}, year = {2018}, month = {Jan-16-2018}, pages = {832 - 837}, abstract = {

In a context of growing attention for shale gas, the precise impact of organic matter (kerogen) on hydrocarbon recovery from unconventional reservoirs still has to be assessed. Kerogen\&$\#$39;s microstructure is characterized by a very disordered pore network that greatly affects hydrocarbon transport. The specific structure and texture of this organic matter at the nanoscale is highly dependent on its origin. In this study, by the use of statistical physics and molecular dynamics, we shed some new lights on hydrocarbon transport through realistic molecular models of kerogen at different level of maturity [Bousige et al. Nat. Mater. 2016, 15, 576]. Despite the apparent complexity, severe confinement effects controlled by the porosity of the various kerogens allow linear alkanes (from methane to dodecane) transport to be studied only via the self-diffusion coefficients of the species. The decrease of the transport coefficients with the amount of adsorbed fluid can be described by a free volume theory. Ultimately, the transport coefficients of hydrocarbons can be expressed simply as a function of the porosity (volume fraction of void) of the microstructure, thus paving the way for shale gas recovery predictions.

https://pubs-acs-org.libproxy.mit.edu/appl/literatum/publisher/achs/journals/content/nalefd/2018/nalefd.2018.18.issue-2/acs.nanolett.7b04079/20180208/images/medium/nl-2017-04079p_0004.gif

}, keywords = {Kerogen; microporosity; diffusion; hydrocarbons; shales}, issn = {1530-6984}, doi = {10.1021/acs.nanolett.7b04079}, url = {http://pubs.acs.org/doi/10.1021/acs.nanolett.7b04079}, author = {Ama{\"e}l Obliger and Franz-Josef Ulm and Roland Jean-Marc Pellenq} } @article {630, title = {Mesoscale structure, mechanics, and transport properties of source rocks{\textquoteright} organic pore networks}, journal = {Proceedings of the National Academy of Sciences}, volume = {115}, year = {2018}, month = {Dec-04-2018}, pages = {12365-12370}, abstract = {

Organic matter is responsible for the generation of hydrocarbons during the thermal maturation of source rock formation. This geochemical process engenders a network of organic hosted pores that governs the flow of hydrocarbons from the organic matter to fractures created during the stimulation of production wells. Therefore, it can be reasonably assumed that predictions of potentially recoverable confined hydrocarbons depend on the geometry of this pore network. Here, we analyze mesoscale structures of three organic porous networks at different thermal maturities. We use electron tomography with subnanometric resolution to characterize their morphology and topology. Our 3D reconstructions confirm the formation of nanopores and reveal increasingly tortuous and connected pore networks in the process of thermal maturation. We then turn the binarized reconstructions into lattice models including information from atomistic simulations to derive mechanical and confined fluid transport properties. Specifically, we highlight the influence of adsorbed fluids on the elastic response. The resulting elastic energy concentrations are localized at the vicinity of macropores at low maturity whereas these concentrations present more homogeneous distributions at higher thermal maturities, due to pores\&$\#$39; topology. The lattice models finally allow us to capture the effect of sorption on diffusion mechanisms with a sole input of network geometry. Eventually, we corroborate the dominant impact of diffusion occurring within the connected nanopores, which constitute the limiting factor of confined hydrocarbon transport in source rocks.

}, keywords = {porous media; electron tomography; mechanics; fluid transport; mesoscale}, issn = {0027-8424}, doi = {10.1073/pnas.1808402115}, url = {http://www.pnas.org/lookup/doi/10.1073/pnas.1808402115}, author = {Berthonneau, Jeremie and Ama{\"e}l Obliger and Valdenaire, Pierre-Louis and Grauby, Olivier and Ferry, Daniel and Chaudanson, Damien and Pierre E. Levitz and Kim, Jae Jin and Franz-Josef Ulm and Roland Jean-Marc Pellenq} } @article {570, title = {Poroelasticity of Methane-Loaded Mature and Immature Kerogen from Molecular Simulations}, journal = {Langmuir}, volume = {34}, year = {2018}, month = {Nov-13-2018}, pages = {13766 - 13780}, abstract = {

While hydrocarbon expulsion from kerogen is certainly the key step in shale oil/gas recovery, the poromechanical couplings governing this desorption process, taking place under a significant pressure gradient, are still poorly understood. Especially, most molecular simulation investigations of hydrocarbon adsorption and transport in kerogen have so far been performed under the rigid matrix approximation, implying that the pore space is independent of pressure, temperature, and fluid loading, or in other words, neglecting poromechanics. Here, using two hydrogenated porous carbon models as proxies for immature and overmature kerogen, that is, highly aliphatic hydrogen-rich vs highly aromatic hydrogen-poor models, we perform an extensive molecular-dynamics-based investigation of the evolution of the poroelastic properties of those matrices with respect to temperature, external pressure, and methane loading as a prototype alkane molecule. The rigid matrix approximation is shown to hold reasonably well for overmature kerogen even though accounting for flexibility has allowed us to observe the well-known small volume contraction at low fluid loading and temperature. Our results demonstrate that immature kerogen is highly deformable. Within the ranges of conditions considered in this work, its density can double and its accessible porosity (to a methane molecule) can increase from 0 to \∼30\%. We also show that these deformations are significantly nonaffine (i.e., nonhomogeneous), especially upon fluid adsorption or desorption.

}, keywords = {ADSORPTION-INDUCED DEFORMATION; ORGANIC-MATTER; COMPETITIVE ADSORPTION; NANOPOROUS MEDIA; POROUS CARBONS; GLASSY-CARBON; COAL; TRANSPORT; SORPTION; MODEL}, issn = {0743-7463}, doi = {10.1021/acs.langmuir.8b02534}, url = {http://pubs.acs.org/doi/10.1021/acs.langmuir.8b02534}, author = {Obliger, Ama{\"e}l and Valdenaire, Pierre-Louis and Capit, Nicolas and Franz-Josef Ulm and Roland Jean-Marc Pellenq and Jean-Marc Leyssale} } @article {624, title = {Accurate classical short-range forces for the study of collision cascades in Fe{\textendash}Ni{\textendash}Cr}, journal = {Computer Physics Communications}, volume = {219}, year = {2017}, month = {Oct-2017}, pages = {11 - 19}, abstract = {

The predictive power of a classical molecular dynamics simulation is largely determined by the physical validity of its underlying empirical potential. In the case of high-energy collision cascades, it was recently shown that correctly modeling interactions at short distances is necessary to accurately predict primary damage production. An ab initio based framework is introduced for modifying an existing embedded-atom method FeNiCr potential to handle these short-range interactions. Density functional theory is used to calculate the energetics of two atoms approaching each other, embedded in the alloy, and to calculate the equation of state of the alloy as it is compressed. The pairwise terms and the embedding terms of the potential are modified in accordance with the ab initio results. Using this reparametrized potential, collision cascades are performed in Ni50Fe50, Ni80Cr20 and Ni33Fe33Cr33. The simulations reveal that alloying Ni and NiCr to Fe reduces primary damage production, in agreement with some previous calculations. Alloying Ni and NiFe to Cr does not reduce primary damage production, in contradiction with previous calculations.

}, issn = {00104655}, doi = {10.1016/j.cpc.2017.05.001}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0010465517301315}, author = {B{\'e}land, Laurent Karim and Tamm, Artur and Mu, Sai and Samolyuk, D. and Osetsky, N. and Aabloo, Alvo and Klintenberg, Mattias and Caro, Alfredo and Stoller, E.} } @article {588, title = {From cellulose to kerogen: molecular simulation of a geological process}, journal = {Chemical Science}, volume = {8}, year = {2017}, month = {Dec-01-2017}, pages = {8325-8335}, abstract = {

The process by which organic matter decomposes deep underground to form petroleum and its underlying kerogen matrix has so far remained a no man\&$\#$39;s land to theoreticians, largely because of the geological (Myears) timescale associated with the process. Using reactive molecular dynamics and an accelerated simulation framework, the replica exchange molecular dynamics method, we simulate the full transformation of cellulose into kerogen and its associated fluid phase under prevailing geological conditions. We observe in sequence the fragmentation of the cellulose crystal and production of water, the development of an unsaturated aliphatic macromolecular phase and its aromatization. The composition of the solid residue along the maturation pathway strictly follows what is observed for natural type III kerogen and for artificially matured samples under confined conditions. After expulsion of the fluid phase, the obtained microporous kerogen possesses the structure, texture, density, porosity and stiffness observed for mature type III kerogen and a microporous carbon obtained by saccharose pyrolysis at low temperature. As expected for this variety of precursor, the main resulting hydrocarbon is methane. The present work thus demonstrates that molecular simulations can now be used to assess, almost quantitatively, such complex chemical processes as petrogenesis in fossil reservoirs and, more generally, the possible conversion of any natural product into bio-sourced materials and/or fuel.

}, issn = {2041-6520}, doi = {10.1039/C7SC03466K}, url = {http://xlink.rsc.org/?DOI=C7SC03466K}, author = {Atmani, Lea and Christophe Bichara and Roland Jean-Marc Pellenq and Henri Van Damme and Adri CT Van Duin and Raza, Zamaan and Truflandier, Lionel A. and Ama{\"e}l Obliger and Kralert, Paul G. and Franz-Josef Ulm and Jean-Marc Leyssale} } @article {410, title = {Magnetism as indirect tool for carbon content assessment in nickel nanoparticles}, journal = {Journal of Applied Physics}, volume = {122}, year = {2017}, month = {Jul-12-2017}, pages = {213902}, abstract = {

We report a combined experimental and theoretical study to ascertain carbon solubility in nickel nanoparticles embedded into a carbon matrix via the one-pot method. This original approach is based on the experimental characterization of the magnetic properties of Ni at room temperature and Monte Carlo simulations used to calculate the magnetization as a function of C content in Ni nanoparticles. Other commonly used experimental methods fail to accurately determine the chemical analysis of these types of nanoparticles. Thus, we could assess the C content within Ni nanoparticles and it decreases from 8 to around 4\ at. \% with increasing temperature during the synthesis. This behavior could be related to the catalytic transformation of dissolved C in the Ni particles into graphite layers surrounding the particles at high temperature. The proposed approach is original and easy to implement experimentally since only magnetization measurements at room temperature are needed. Moreover, it can be extended to other types of magnetic nanoparticles dissolving carbon.

}, issn = {0021-8979}, doi = {10.1063/1.5006138}, url = {http://aip.scitation.org/doi/10.1063/1.5006138http://aip.scitation.org/doi/pdf/10.1063/1.5006138}, author = {Oumellal, Y. and Yann Magnin and {\'\i}nez de Yuso, A. and Aguiar Hualde, J. M. and Amara, H. and Paul-Boncour, V. and Matei Ghimbeu, C. and Malouche, A. and Christophe Bichara and Roland Jean-Marc Pellenq and Zlotea, C.} } @article {605, title = {Small solar system bodies as granular systems}, journal = {EPJ Web of Conferences}, volume = {140}, year = {2017}, month = {Jun-30-2017}, pages = {Article Number 14011}, abstract = {

Asteroids and other Small Solar System Bodies (SSSBs) are currently of great scientific and even industrial interest. Asteroids exist as the permanent record of the formation of the Solar System and therefore hold many clues to its understanding as a whole, as well as insights into the formation of planetary bodies. Additionally, SSSBs are being investigated in the context of impact risks for the Earth, space situational awareness and their possible industrial exploitation (asteroid mining). In all these aspects, the knowledge of the geophysical characteristics of SSSB surface and internal structure are of great importance. Given their size, constitution, and the evidence that many SSSBs are not simple monoliths, these bodies should be studied and modelled as self-gravitating granular systems in general, or as granular systems in micro-gravity environments in particular contexts. As such, the study of the geophysical characteristics of SSSBs is a multi-disciplinary effort that lies at the crossroads between Granular Mechanics, Celestial Mechanics, Soil Mechanics, Aerospace Engineering and Computer Sciences.

}, doi = {10.1051/epjconf/201714014011}, url = {http://www.epj-conferences.org/10.1051/epjconf/201714014011}, author = {Hestroffer, Daniel and Adriano Campo Bagat{\'\i}n and Losert, Wolfgang and Opsomer, Eric and S{\'a}nchez, Paul and Scheeres, Daniel J. and Staron, Lydie and Taberlet, Nicolas and Yano, Hajime and Eggl, Siegfried and Lecomte, Charles-Edouard and Murdoch, Naomi and Farhang Radja{\"\i} and Richardson, Derek C. and Salazar, Marcos and Schwartz, Stephen R. and Tanga, Paolo}, editor = {Saeid Nezamabadi and Luding, S. and Jean-Yves Delenne} } @article {269, title = {An equation of state for granular media at the limit state of isotropic compression}, journal = {EPL (Europhysics Letters)}, volume = {114}, year = {2016}, month = {Apr-2016}, pages = {Article Number: 14004}, abstract = {

It is well believed that the volumetric entropy of Edwards captures part of the physics of granular media, but it is still unclear whether it can be applied to granular systems under mechanical stress. By working out a recent proposal by Aste, Di Matteo et al. to measure Edwards\&$\#$39; compactivity from the volume distribution of Vorono\ï or Delaunay tessellations (Phys. Rev. E, 77 (2008) 021309), and assuming that the total volume divides into elementary cells of fixed minimal volume, we derive an equation of state relating the compactivity to the packing fraction, and we show by extensive molecular-dynamics simulations that this equation and its underlying assumption describe well the volumetric aspects of both the limit state of isotropic compression and the limit state of shear (also called critical state in soil mechanics) for three-dimensional ensembles of mono-disperse spheres, for a broad range of the sliding and rolling friction coefficients. In addition, by using the limit state of isotropic compression as testing ground, we find that the compactivity, the entropy per elementary cell and the number of elementary cells per grain computed by this method are the same within statistical precision, either by using Vorono\ï, Delaunay, or centroidal Vorono\ï tessellations, allowing thus for an objective definition. This means that not only Aste\&$\#$39;s cell method is robust and suitable to measure Edwards\&$\#$39; compactivity of granular systems under mechanical stress but also the actual nature of the elementary cells might be unimportant.

}, issn = {0295-5075}, doi = {10.1209/0295-5075/114/14004}, author = {Oquendo, W. F. and Mu{\~n}oz, J. D. and Farhang Radja{\"\i}} } @article {249, title = {Free Volume Theory of Hydrocarbon Mixture Transport in Nanoporous Materials}, journal = {The Journal of Physical Chemistry Letters}, volume = {7}, year = {2016}, month = {Jun-10-2016}, pages = {3712 - 3717}, abstract = {
Despite recent focus on shale gas, hydrocarbon recovery from the ultraconfining and disordered porosity of organic matter in shales (kerogen) remains poorly understood. Key aspects such as the breakdown of hydrodynamics at the nanoscale and strong adsorption effects lead to unexplained non-Darcy behaviors. Here, molecular dynamics and statistical mechanics are used to elucidate hydrocarbon mixture transport through a realistic molecular model of kerogen [Bousige, C.; et al. Nat. Mater. 2016, 15, 576]. Owing to strong adsorption effects, velocity cross-correlations between the mixture components and between molecules of the same species are shown to be negligible. This allows estimation of each component permeance from its self-diffusivity, which can be obtained from single-component data. These permeances are found to scale with the reciprocal of the alkane length and decrease with the number of adsorbed molecules following a simple free volume theory, therefore allowing mixture transport prediction as a function of the amount of trapped fluid.
Abstract Image
}, issn = {1948-7185}, doi = {10.1021/acs.jpclett.6b01684}, author = {Ama{\"e}l Obliger and Roland Jean-Marc Pellenq and Franz-Josef Ulm and Benoit A. Coasne} } @article {640, title = {Nanoporous chalcogenides for adsorption and gas separation}, journal = {Physical Chemistry Chemical Physics}, volume = {18}, year = {2016}, month = {May-21-2016}, pages = {13449-13458}, abstract = {

The adsorption and gas separation properties of amorphous porous chalcogenides such as GeS2 are investigated using statistical mechanics molecular simulation. Using a realistic molecular model of such amorphous adsorbents, we show that they can be used efficiently to separate different gases relevant to environmental and energy applications (H-2, CO2, CH4, N-2). In addition to shedding light on the microscopic adsorption mechanisms, we show that coadsorption in this novel class of porous materials can be described using the ideal adsorbed solution theory (IAST). Such a simple thermodynamic model, which allows avoiding complex coadsorption measurements, describes the adsorption of mixture from pure component adsorption isotherms. Our results, which are found to be in good agreement with available experimental data, paves the way for the design of gas separation membranes using the large family of porous chalcogenides.

}, issn = {1463-9076}, doi = {10.1039/C6CP00467A}, url = {http://xlink.rsc.org/?DOI=C6CP00467A}, author = {Guido Ori and Carlo Massobrio and Pradel, Annie and Ribes, Miche and Benoit A. Coasne} } @article {185, title = {The Maya blue nanostructured material concept applied to colouring geopolymers}, journal = {RSC Adv.}, volume = {5}, year = {2015}, month = {Nov-2015}, pages = {98834 - 98841}, abstract = {

Maya blue is an ancient nanostructured pigment synthetized by assembling indigo, a natural dye, with palygorskite, a microfibrous clay mineral. The novelty of our approach is to mimic \“pre-Columbian nanotechnology\” and to functionalize geopolymers with a sepiolite-based hybrid organic\–inorganic nanocomposite inspired from the Maya blue. It is acid- and UV-resistant, as confirmed by the stability of Maya mural paintings over time. We synthesized analogous pigments, using methylene blue (MB) and methyl red (MR) as organic dyes and sepiolite as fibrous clay mineral. We used an aqueous and a solid-state method, both leading to encapsulation of dye monomers into the clay micropores, as confirmed by UV-vis spectroscopy. This nanostructured pigment was then included into a geopolymer matrix at room temperature. The stability of the new material to UV and acid was tested. It was confirmed that it is the prior encapsulation of the dye into sepiolite that leads to the stability of the pigment in the geopolymer matrix. This first study opens the way to numerous possibilities for functionalizing inorganic binder materials with organic elements that would be otherwise sensitive to thermal treatment in conventional ceramic processing.

}, doi = {10.1039/C5RA14076E}, author = {Ouellet-Plamondon, Claudiane and Aranda, Pilar and Favier, Aur{\'e}lie and Habert, Guillaume and Henri Van Damme and Ruiz-Hitzky, Eduardo} } @proceedings {358, title = {Micromechanical analysis of the surface erosion of a cohesive soil by means of a coupled LBM-DEM model}, journal = {IV International Conference on Particle-based Methods (PARTICLES 2015)}, volume = {PARTICLE-BASED METHODS IV-FUNDAMENTALS AND APPLICATIONS}, year = {2015}, month = {sept-30-2015}, pages = {519-528}, publisher = {International Center for Numerical Methods in Engineering (CIMNE)}, address = {SEP 28-30 2015 Barcelona, SPAIN}, abstract = {

The elementary mechanisms driving the ubiquitous surface erosion of cohesive geomaterials can be analysed from a micromechanical perspective combining well-known numerical techniques. Here, a coupled model combining the Discrete Element and Lattice Boltzmann methods (DEM-LBM) provides an insight into the solid-fluid interaction during the transient erosion caused by a vertical fluid jet impinging on the surface of a granular assembly. The brittle cementation providing cohesion between the solid grains is described here by means of a simple bond model with a single-parameter yield surface. The initial topology of the surface erosion tends to mimic the profile of fluid velocity directly above the soil surface. We find that both the rate of erosion and the magnitude of eroded mass depend directly on the micromechanical strength of the single solid bonds.

}, keywords = {Cohesion, DEM, LBM, Surface erosion}, url = {https://hal.archives-ouvertes.fr/hal-01269324}, author = {Cuellar, Pablo and Pierre Philippe and St{\'e}phane Bonelli and Benahmed, Nadia and Brunier-Coulin, Florian and Jeff Ngoma and Jean-Yves Delenne and Farhang Radja{\"\i}}, editor = {Onate, E and Bischoff, M and Owen, DRJ} } @proceedings {351, title = {Numerical simulation of granular media composed with irregular polyhedral particles: effect of particles{\textquoteright} angularity}, journal = {2nd International Conference on Particle-Based Methods - Fundamentals and Applications (Particles)}, volume = {PARTICLE-BASED METHODS II: FUNDAMENTALS AND APPLICATIONS}, year = {2015}, month = {Feb-02-2015}, pages = {222-228}, address = {OCT 26-28 2011 Barcelona, SPAIN}, abstract = {

We use contact dynamic simulations to perform a systematic investigation of the effects of particles shape angularity on mechanicals response in sheared granular ma-terials. The particles are irregular polyhedra with varying numbers of face from spheres to \"double pyramid\" shape with a constant aspect ratio. We study the quasi-static behav-ior, structural and force anisotropies of several packings subjected to triaxial compression. An interesting finding is that the shear strength first increases with angularity up to a maximum value and then saturates as the particles become more angular. Analyzing the anisotropies induced by the angular distributions of contacts and forces orientations, we show that the saturation of the shear strength at higher angularities is a consequence of fall-off of the texture anisotropies compensated by an increase of the tangential force anisotropy. This is attributed to the fact that at higher angularity, particles are bet-ter connected (or surrounded) leading to an increase of friction mobilization in order to achieve the deformation. Moreover, the most angular particles also have very few sides so that, this effect is enhanced by the increase of the proportion of face-side and side-side contacts with angularity.

}, keywords = {angularity, force transmission, Granular Materials, particle shape, texture}, url = {https://hal.archives-ouvertes.fr/hal-01112373}, author = {Emilien Az{\'e}ma and Farhang Radja{\"\i} and Dubois, Fr{\'e}d{\'e}ric}, editor = {Onate, E and Owen, DRJ} } @book {647, title = {Springer Series in Materials ScienceMolecular Dynamics Simulations of Disordered MaterialsFirst-Principles Modeling of Binary Chalcogenides: Recent Accomplishments and New Achievements}, volume = {215}, year = {2015}, pages = {313 - 344}, publisher = {Springer International Publishing}, organization = {Springer International Publishing}, address = {Cham}, abstract = {

This contribution is focussed on a set of first-principles molecular dynamics results obtained over the past fifteen years for disordered chalcogenides. In the first part, we sketch and review the historical premises underlying research efforts devoted to the understanding of structural properties in liquid and glassy GexSe1-x systems. We stress the importance of selecting well performing exchange-correlation functionals (within density functional theory) to achieve a correct description of short and intermediate range order. In the second part, we provide a specific, comparative example of structural analysis for chalcogenide GeX4 systems differing by the chemical identity of the X atom. We are able to demonstrate that the correct account of differences between the coordination environments of the two corresponding glasses requires system sizes substantially larger than similar to 100 atoms.

}, isbn = {978-3-319-15674-3}, issn = {0933-033X}, doi = {10.1007/978-3-319-15675-010.1007/978-3-319-15675-0_12}, url = {http://link.springer.com/10.1007/978-3-319-15675-0}, author = {Bouzid, A. and Le Roux, S. and Guido Ori and Tugene, Christine and Boero, M. and Carlo Massobrio}, editor = {Carlo Massobrio and Du, Jincheng and Bernasconi, Marco and Salmon, Philip S.} } @book {648, title = {Springer Series in Materials ScienceMolecular Dynamics Simulations of Disordered MaterialsMolecular Modeling of Glassy Surfaces}, volume = {215}, year = {2015}, pages = {345 - 365}, publisher = {Springer International Publishing}, organization = {Springer International Publishing}, address = {Cham}, abstract = {

Progress in computational materials science has allowed the development of realistic models for a wide range of materials including both crystalline and glassy solids. In recent years, with the growing interest in nanoparticles and porous materials, more attention has been devoted to the design of realistic models of glassy surfaces and finely divided materials. The structural disorder in glassy surfaces, however, poses a major challenge which consists of describing such surfaces using computer simulations. In this paper, we show how atomic-scale simulations can be used to develop and investigate the properties of glassy surfaces. We illustrate how both first principles calculations and classical molecular mechanics can be used to follow the trajectory at finite temperature of these systems, and obtain statistical thermodynamic averages to compare against available experiments. Both glassy oxide (silica) and non-oxide (chalcogenide) surfaces are considered.

}, isbn = {978-3-319-15674-3}, issn = {0933-033X}, doi = {10.1007/978-3-319-15675-010.1007/978-3-319-15675-0_13}, url = {http://link.springer.com/10.1007/978-3-319-15675-0}, author = {Guido Ori and Carlo Massobrio and Bouzid, A. and Benoit A. Coasne}, editor = {Carlo Massobrio and Du, Jincheng and Bernasconi, Marco and Salmon, Philip S.} } @article {180, title = {Structure and Dynamics of Ionic Liquids Confined in Amorphous Porous Chalcogenides}, journal = {Langmuir}, volume = {31}, year = {2015}, month = {Jun-23-2015}, pages = {6742 - 6751}, abstract = {
Abstract Image

Besides the abundant literature on ionic liquids in porous silica and carbon, the confinement of such intriguing liquids in porous chalcogenides has received very little attention. Here, molecular simulation is employed to study the structural and dynamical properties of a typical ionic liquid confined in a realistic molecular model of amorphous chalcogenide with various pore sizes and surface chemistries. Using molecular dynamics in the isobaric\–isothermal (NPT) ensemble, we consider confinement conditions relevant to real samples. Both the structure and self-dynamics of the confined phase are found to depend on the surface-to-volume ratio of the host confining material. Consequently, most properties of the confined ionic liquid can be written as a linear combination of surface and bulk-like contributions, arising from the ions in contact with the surface and the ions in the pore center, respectively. On the other hand, collective dynamical properties such as the ionic conductivity remain close to their bulk counterpart and almost insensitive to pore size and surface chemistry. These results, which are in fair agreement with available experimental data, provide a basis for the development of novel applications using hybrid organic\–inorganic solids consisting of ionic liquids confined in porous chalcogenides.

}, issn = {0743-7463}, doi = {10.1021/acs.langmuir.5b00982}, author = {Guido Ori and Carlo Massobrio and Pradel, Annie and Ribes, Michel and Benoit A. Coasne} } @proceedings {359, title = {Transient regime to fluidized chimney within a granular bed by means of a 2D DEM/LBM modeling}, journal = {IV International Conference on Particle-based Methods (PARTICLES 2015)}, volume = {PARTICLE-BASED METHODS IV-FUNDAMENTALS AND APPLICATIONS}, year = {2015}, month = {sept-30-2015}, pages = {558-566}, publisher = {International Center for Numerical Methods in Engineering (CIMNE)}, address = {SEP 28-30 2015 Barcelona, SPAIN}, abstract = {

Beyond a given threshold, an upward fluid flow at constant flowrate, injected through a small size section, is able to generate a fluidization along a vertical chimney over the entire height of a granular assembly. Fluidization is first initiated in the immediate vicinity of the injection hole and then the fluidized zone grows gradually until reaching the upper surface of the granular packing. In this work, we present numerical results on the kinetics of chimney fluidization in an immersed granular bed produced with two-dimensional simulations coupling the Discrete Element and Lattice Boltzmann Methods (DEM-LBM). A parametric study is carried out with 11 different sets of physical parameters and analyzed based on spatio-temporal diagrams. Then a dimensional analysis allows finding general scaling laws for both threshold and growth rate of the fluidized zone by use of two dimensionless numbers, namely Reynolds and Archimedes numbers, while quite simple empirical relationships can also be proposed.

}, keywords = {DEM, Fluidization, Granular Materials, LBM}, url = {https://hal.archives-ouvertes.fr/hal-01269325}, author = {Jeff Ngoma and Pierre Philippe and St{\'e}phane Bonelli and Cuellar, Pablo and Jean-Yves Delenne and Farhang Radja{\"\i}}, editor = {Onate, E and Bischoff, M and Owen, DRJ} } @article {83, title = {Ionic liquid confined in silica nanopores: molecular dynamics in the isobaric-isothermal ensemble}, journal = {Molecular Physics}, volume = {112}, year = {2014}, month = {Avr-03-2014}, pages = {1350-1361}, type = {Article}, abstract = {

Molecular dynamics simulations in the isobaric-isothermal ensemble are used to investigate the structure and dynamics of an ionic liquid confined at ambient temperature and pressure in hydroxylated amorphous silica nanopores. The use of the isobaric-isothermal ensemble allows estimating the effect of confinement and surface chemistry on the density of the confined ionic liquid. The structure of the confined ionic liquid is investigated using density profiles and structural order parameters while its dynamics is assessed by determining the mobility and ionic conductivity of the confined phase. Despite the important screening of the electrostatic interactions (owing to the small Debye length in ionic liquids), the local structure of the confined ionic liquid is found to be mostly driven by electrostatic interactions. We show that both the structure and dynamics of the confined ionic liquid can be described as the sum of a surface contribution arising from the ions in contact with the surface and a bulk-like contribution arising from the ions located in the pore centre; as a result, most properties of the confined ionic liquid are a simple function of the surface-to-volume ratio of the host porous material. In contrast, the ionic conductivity of the confined ionic liquid, which is a collective dynamical property, is found to be similar to the bulk. This study sheds light on the complex behaviour of hybrid materials made up of ionic liquid confined in inorganic porous materials.

}, keywords = {amorphous silica, ionic liquids, molecular dynamics, surface}, issn = {0026-8976}, doi = {10.1080/00268976.2014.902138}, author = {Guido Ori and Fran{\c c}ois Villemot and Lydie Viau and Andre Vioux and Benoit A. Coasne} } @article {650, title = {Molecular dynamics simulation of amorphous HfO 2 for resistive RAM applications}, journal = {Modelling and Simulation in Materials Science and Engineering}, volume = {22}, year = {2014}, month = {Sep-2014}, pages = { Article Number 065006 }, abstract = {

HfO2 is widely investigated as the favoured material for resistive RAM device implementation. The structural features of HfO2 play a fundamental role in the switching mechanisms governing resistive RAM operations, and a comprehensive understanding of the relation between the atomistic properties and final device behaviour is still missing. In addition, despite the fact that ultra-scaled 10 nm resistive RAM will probably be made of amorphous HfO2, a deeper investigation of the structure is necessary. In this paper, the classical molecular dynamics technique was used to investigate the disordered atomic configuration of amorphous HfO2. The influence of density on both the atomistic structure and the diffusion of O species was carefully analysed. The results achieved show that the atomistic structure of an amorphous HfO2 system is strongly affected by the density, and the amorphous system is rearranged in an atomic configuration similar to the crystalline configuration at similar densities. The diffusion of oxygen atoms increases with the decrease of the density, consistent with a less-packed atomic structure which allows for easier movement of this species.

}, issn = {0965-0393}, doi = {10.1088/0965-0393/22/6/065006}, url = {http://stacks.iop.org/0965-0393/22/i=6/a=065006?key=crossref.b7d708e3a43b9124ea539668eee311b0}, author = {Broglia, G and Guido Ori and Larcher, L and Montorsi, M} } @article {86, title = {Surface of glassy GeS2: A model based on a first-principles approach}, journal = {Physical Review B}, volume = {90}, year = {2014}, month = {Jul-2014}, type = {Article}, chapter = {045423}, abstract = {

First-principles calculations within the framework of the density functional theory are used to construct realistic models for the surface of glassy GeS2(g\−GeS2). Both calculations at T=0 K and at finite temperature (T=300 K) are considered. This allows for a comparison between the structural and electronic properties of surface and bulk g\−GeS2. Although the g\−GeS2 surface recovers the main tetrahedral structural motif of bulk g\−GeS2, the number of fourfold coordinated Ge atoms and twofold coordinated S atoms is smaller than in the bulk. On the contrary, the surface system features a larger content of overcoordinated S atoms and threefold coordinated Ge atoms. This effect is more important for the g\−GeS2 surface relaxed at 0 K. Maximally localized Wannier functions (WF) are used to inspect the nature of the chemical bonds of the structural units present at the g\−GeS2 surface. We compare the ability of several charge derivation methods to capture the atomic charge variations induced by a coordination change. Our estimate for the charges allows exploiting the first-principles results as a data base to construct a reliable interatomic force field.

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}, issn = {1098-0121}, doi = {10.1103/PhysRevB.90.045423}, author = {Guido Ori and Carlo Massobrio and Bouzid, A. and Boero, M. and Benoit A. Coasne} } @article {77, title = {First-principles molecular dynamics study of glassy GeS2: Atomic structure and bonding properties}, journal = {Physical Review B}, volume = {88}, year = {2013}, month = {Nov-04-2013}, type = {Article}, abstract = {

The structure of glassy GeS2 is studied in the framework of density functional theory, by using a fully self-consistent first-principles molecular dynamics (FPMD) scheme. A comparative analysis is performed with previous molecular dynamics data obtained within the Harris functional (HFMD) total energy approach. The calculated total neutron structure factor exhibits an unprecedented agreement with the experimental counterpart. In particular, the height of the first sharp diffraction peak (FSDP) improves considerably upon the HFMD results. Both the Ge and the S subnetworks are affected by a consistent number of miscoordinations, coexisting with the main tetrahedral structural motif. Glassy GeS2 features a short-range order quite similar to the one found in glassy GeSe2, a notable exception being the larger number of edge-sharing connections. An electronic structure localization analysis, based on the Wannier functions formalism, provides evidence of a more enhanced ionic character in glassy GeS2 when compared to glassy GeS2.

}, issn = {1098-0121}, doi = {10.1103/PhysRevB.88.174201}, author = {Celino, M. and Le Roux, S. and Guido Ori and Benoit A. Coasne and Bouzid, A. and Boero, M. and Carlo Massobrio} } @proceedings {370, title = {GRANULAR SLUMPING IN A FLUID : FOCUS ON RUNOUT DISTANCES}, journal = {3rd International Conference on Particle-based Methods}, volume = {PARTICLE-BASED METHODS III: FUNDAMENTALS AND APPLICATIONS}, year = {2013}, month = {Sept-2013}, pages = {115-123}, address = {SEP 18-20 2013 Stuttgart, GERMANY}, author = {Vincent Topin and Yann Monerie and Perales, F.}, editor = {Bischoff, M and Ramm, E and Onate, E} } @article {284, title = {An interdisciplinary approach towards improved understanding of soil deformation during compaction}, journal = {Soil and Tillage Research}, volume = {128}, year = {2013}, month = {Apr-2013}, pages = {61 - 80}, abstract = {

Soil compaction not only reduces available pore volume in which fluids are stored, but it alters the arrangement of soil constituents and pore geometry, thereby adversely impacting fluid transport and a range of soil ecological functions. Quantitative understanding of stress transmission and deformation processes in arable soils remains limited. Yet such knowledge is essential for better predictions of effects of soil management practices such as agricultural field traffic on soil functioning. Concepts and theory used in agricultural soil mechanics (soil compaction and soil tillage) are often adopted from conventional soil mechanics (e.g. foundation engineering). However, in contrast with standard geotechnical applications, undesired stresses applied by agricultural tyres/tracks are highly dynamic and last for very short times. Moreover, arable soils are typically unsaturated and contain important secondary structures (e.g. aggregates), factors important for affecting their soil mechanical behaviour. Mechanical processes in porous media are not only of concern in soil mechanics, but also in other fields including geophysics and granular material science. Despite similarity of basic mechanical processes, theoretical frameworks often differ and reflect disciplinary focus. We review concepts from different but complementary fields concerned with porous media mechanics and highlight opportunities for synergistic advances in understanding deformation and compaction of arable soils. We highlight the important role of technological advances in non-destructive measurement methods at pore (X-ray tomography) and soil profile (seismic) scales that not only offer new insights into soil architecture and enable visualization of soil deformation, but are becoming instrumental in the development and validation of new soil compaction models. The integration of concepts underlying dynamic processes that modify soil pore spaces and bulk properties will improve the understanding of how soil management affect vital soil mechanical, hydraulic and ecological functions supporting plant growth.

}, issn = {01671987}, doi = {10.1016/j.still.2012.10.004}, author = {Keller, T. and Lamand, M. and Peth, S. and Berli, M. and Jean-Yves Delenne and Baumgarten, W. and Rabbel, W. and Farhang Radja{\"\i} and Rajchenbach, J. and Selvadurai, A.P.S. and Or, D.} } @article {220, title = {Strength Homogenization of Double-Porosity Cohesive-Frictional Solids}, journal = {Journal of Applied Mechanics}, volume = {80}, year = {2013}, month = {Mar-2013}, pages = {Article Number: 020902}, abstract = {

The strength homogenization of cohesive-frictional solids influenced by the presence of two pressurized pore spaces of different characteristic sizes is addressed in this study. A two-scale homogenization model is developed based on limit analysis and the second-order method (SOM) in linear comparison composite theory, which resolves the nonlinear strength behavior through the use of linear comparison composites with optimally chosen properties. For the scale of the classical configuration of a porous solid, the formulation employs a compressible thermoelastic comparison composite to deliver closed-form expressions of strength criteria. Comparisons with numerical results reveal that the proposed homogenization estimates for drained conditions are adequate except for high triaxialities in the mean compressive strength regime. At the macroscopic scale of the double-porosity material, the SOM results are in agreement with strength criteria predicted by alternative micromechanics solutions for materials with purely cohesive solid matrices and drained conditions. The model predictions for the cohesive-frictional case show that drained strength development in granularlike composites is affected by the partitioning of porosity between micro-and macropores. In contrast, the drained strength is virtually equivalent for single-and double-porosity materials with matrix-inclusion morphologies. Finally, the second-order linear comparison composite approach confirms the applicability of an effective stress concept, previously proposed in the literature of homogenization of cohesive-frictional porous solids, for double-porosity materials subjected to similar pressures in the two pore spaces. For dissimilar pore pressures, the model analytically resolves the complex interplays of microstructure, solid properties, and volume fractions of phases, which cannot be recapitulated by the effective stress concept.

}, issn = {0021-8936}, doi = {10.1115/1.4007905}, author = {J. Alberto Ortega and Franz-Josef Ulm} } @proceedings {350, title = {Effect of Particle Shape non-Convexity on the Rheology of Granular Media : 3D Contact Dynamics Simulations}, journal = {2nd International Conference on Particle-Based Methods - Fundamentals and Applications (Particles)}, volume = {PARTICLE-BASED METHODS II: FUNDAMENTALS AND APPLICATIONS}, year = {2012}, month = {Apr-10-2012}, pages = {427-434}, address = {OCT 26-28 2011 Barcelona, SPAIN}, abstract = {

We analyze the effect of particle shape non-convexity on the quasi-static behavior of granular materials by means of contact dynamics simulations. The particles are regular aggregates of four overlapping spheres described by a nonconvexity parameter depending on the relative positions of the particles. Several packings are first submitted to isotropic compression without friction. We find that, as in 2D, the solid fraction of isotropic packings increases with non-convexity up to a maximum value and then declines to be nearly equal to that of a packing composed of only spheres. It is also remarkable that the coordination number increases quickly and saturates so that the packings composed of grains with a high level of nonconvexity are looser but more strongly connected. Then, the quasi-static behavior, structural and force anisotropies are analyzed by subjecting each packing to a triaxial compression. We find that the shear strength increases with non-convexity. We show that this increase results from the presence of multiple contacts between trimers leading to enhanced frictional interlocking.

}, keywords = {force transmission, Granular Materials, non-convexity, particle shape, texture}, url = {https://hal.archives-ouvertes.fr/hal-00686453}, author = {Baptiste Saint-Cyr and Emilien Az{\'e}ma and Jean-Yves Delenne and Farhang Radja{\"\i} and Philippe Sornay}, editor = {Onate, E and Owen, DRJ} } @article {303, title = {Nanochemomechanical assessment of shale: a coupled WDS-indentation analysis}, journal = {Acta Geotechnica}, volume = {7}, year = {2012}, month = {Dec-2012}, pages = {271 - 295}, abstract = {

Establishing the links between the composition, microstructure and mechanics of shale continues to be a formidable challenge for the geomechanics community. In this study, a robust methodology is implemented to access the in situ chemomechanics of this sedimentary rock at micrometer length scales. Massive grids of coupled wave dispersive spectroscopy (WDS) and instrumented indentation experiments were performed over representative material surfaces to accommodate the highly heterogeneous composition and microstructure of shale. The extensive datasets of compositional and mechanical properties were analyzed using multi-variate clustering statistics to determine the attributes of active phases present in shale at microscales. Our chemomechanical analysis confirmed that the porous clay (PC) mechanical phase inferred by statistical indentation corresponds to the clay mineral phase defined strictly on chemical grounds. The characteristic stiffness and hardness behaviors of the PC are realized spatially in regions removed from silt inclusions of quartz and feldspar. At the microscale shared by indentation and WDS experiments, a consistent chemomechanical signature for shale emerges in which the heterogeneities of the PC are captured by the standard deviations of indentation properties and concentrations of chemical elements. However, these local behaviors are of second order compared to the global trend observed for mean mechanical properties and the clay packing density, which synthesizes the relative volumes of clay and nanoporosity in the material. The coupled statistical indentation and WDS technique represents a viable approach to characterize the chemomechanics of shale and other natural porous composites at a consistent scale below the macroscopic level.

}, issn = {1861-1125}, doi = {10.1007/s11440-012-0185-4}, author = {Deirieh, A. and J. Alberto Ortega and Franz-Josef Ulm and Younane N. Abousleiman} } @proceedings {349, title = {Creep behaviour of confined layers of polyhedral grains}, journal = {2nd International Conference on Particle-Based Methods - Fundamentals and Applications (Particles)}, volume = {PARTICLE-BASED METHODS II: FUNDAMENTALS AND APPLICATIONS }, year = {2011}, month = {Oct-2011}, pages = {574-583}, address = {OCT 26-28 2011 Barcelona, SPAIN}, abstract = {

By means of contact dynamics simulations, we investigate the creep deformation of a thin granular layer composed of irregular polyhedral particles under the action of a constant vertical overload applied on a horizontal wall on top of the layer. We show that the total deformation induced by the overload increases with the ratio between the vertical and confining horizontal stresses and the aspect ratio of the sample. The effect of the aspect ratio is a consequence of the mobilized wall-grain friction forces at the top and bottom boundaries, that lead to enhanced strength by stabilizing strong force chains at the center of the sample. We also evidence the influence of loading history due to strain-induced fabric change or inertial effects resulting from the instant application of the overload. The topology of the contact network evolves in close correlation with creep. In particular, the face/face contacts between polyhedral particles concentrate largest force chains and their number is an increasing function of creep. A crucial feature of a confined granular system is the statistical variability of the mechanical response that we analyzed for creep deformations by performing a large number of simulations for independent initial configurations. Our data indicate that the distribution of fluctuations with respect to the mean creep falls off exponentially.

}, url = {https://hal.archives-ouvertes.fr/hal-00761094}, author = {Quezada, Juan Carlos and Farhang Radja{\"\i} and Breul, Pierre and Saussine, Gilles}, editor = {Onate, E and Owen, DRJ} } @article {258, title = {The nanogranular origin of friction and cohesion in shale-A strength homogenization approach to interpretation of nanoindentation results}, journal = {International Journal for Numerical and Analytical Methods in Geomechanics}, volume = {35}, year = {2011}, month = {Dec-10-2011}, pages = {1854 - 1876}, abstract = {

An inverse micromechanics approach allows interpretation of nanoindentation results to deliver cohesive-frictional strength behavior of the porous clay binder phase in shale. A recently developed strength homogenization model, using the Linear Comparison Composite approach, considers porous clay as a granular material with a cohesive-frictional solid phase. This strength homogenization model is employed in a Limit Analysis Solver to study indentation hardness responses and develop scaling relationships for indentation hardness with clay packing density. Using an inverse approach for nanoindentation on a variety of shale materials gives estimates of packing density distributions within each shale and demonstrates that there exists shale-independent scaling relations of the cohesion and of the friction coefficient that vary with clay packing density. It is observed that the friction coefficient, which may be interpreted as a degree of pressure-sensitivity in strength, tends to zero as clay packing density increases to one. In contrast, cohesion reaches its highest value as clay packing density increases to one. The physical origins of these phenomena are discussed, and related to fractal packing of these nanogranular materials. Copyright \© 2010 John Wiley \& Sons, Ltd.

}, doi = {10.1002/nag.v35.1710.1002/nag.984}, author = {Bobko, Christopher P. and Gathier, Benjamin and J. Alberto Ortega and Franz-Josef Ulm and Borges, Lavinia and Younane N. Abousleiman} } @proceedings {347, title = {STRENGTH HOMOGENIZATION FOR COHESIVE-FRICTIONAL COMPOSITES: A LINEAR COMPARISON COMPOSITE APPROACH}, journal = {International Workshop on Multiscale and Multiphysics Processes in Geomechanics}, volume = {Springer Series in Geomechanics and Geoengineering}, year = {2011}, month = {Jan-2011}, pages = {57 - 60}, publisher = {Springer Berlin Heidelberg}, address = {JUN 23-25 2010 Stanford Univ, Stanford, CA}, abstract = {

In this work, we address the homogenization of cohesive-frictional strength properties of composite materials through the application of the Linear Comparison Composite (LCC) theory. The LCC methodology is implemented in a multiscale strength model relevant to geomaterials with heterogeneities associated with pore spaces and rigid-like grains. The proposed micromechanics solutions offer quantitative assessments of the effects of grain-scale properties and microstructure on the overall strength of the composite material Keywordscohesive-frictional materials\–linear comparison composite

}, isbn = {978-3-642-19629-4}, issn = {1866-8755}, doi = {10.1007/978-3-642-19630-0_15}, author = {J. Alberto Ortega and Gathier, Benjamin and Franz-Josef Ulm}, editor = {Wu, Wei and Borja, Ronaldo I.} }